Publications

2027

• Cecchini E., Hartlieb T., Gaballa A., Kobow K., Katoch M., Vasileiou G., Hofer W., Kudernatsch M., Bien CG., Coras R., Blümcke I., Hoffmann L.:
  High incidence of Y-chromosome mosaicism in male and female individuals with MOGHE
  (2027)
  DOI: 10.1101/2025.10.15.25337897

2026

• Auer S., Hoffmann L., Schicht M., Blümcke I., Paulsen F.:
  Temporal lobe epilepsy is associated with neuroinflammation, extracellular matrix remodeling, and synaptic protein alterations
  In: Frontiers in Molecular Neuroscience 19 (2026), Article No.: 1728666
  ISSN: 1662-5099
  DOI: 10.3389/fnmol.2026.1728666
• Czerwinski T., Bischof L., Böhringer D., Kara S., Strissel P., Strick R., Huhn N., Winterl A., Gerum R., Wittmann E., Schneider M., Beckmann M., Nusser G., Wiesinger M., Budday S., Lux A., Bosch-Voskens C., Fabry B., Mark C.:
  Immune cells employ intermittent integrin-mediated traction forces for 3D migration
  In: Proceedings of the National Academy of Sciences of the United States of America 123 (2026), Article No.: e2524427123
  ISSN: 0027-8424
  DOI: 10.1073/pnas.2524427123
• Delev D., Yang D., Grabis E., Ort J., Bak A., Bárány L., Villa G., Waldmann JP., Van Loo KMJ., Schünemann KD., Peter S., Wu Y., Hamou H., Menzl L., Vladimirov T., Frank K., Peng T., van Hijfte L., Mühlbauer M., Kastner G., Ricklefs F., Merdan A., Dörfler A., Müller-Voggel N., Blümcke I., Hoffmann L., Venkataramani V., Beckervordersandforth R., Sankowski R., Prinz M., Beck J., Weber YG., Schnell O., Clusmann H., Rampp S., Feldmeyer D., Koch H., Heiland DH.:
  Spatially Restricted Immature Neuronal Programs Drive Functional Connectivity in Glioblastoma
  (2026)
  DOI: 10.2139/ssrn.6352483
• Doludda B., Barde W., D'Egidio F., Fitzsimons CP., Frisén J., Gage FH., Jessberger S., Lazarov O., Lie DC., Lucassen PJ., de Lucia C., Salta E., Song H., Song J., Thuret S., Toda T., Kempermann G.:
  Adult neurogenesis: New neurons, new opportunities
  In: Cell Stem Cell 33 (2026), p. 382-392
  ISSN: 1934-5909
  DOI: 10.1016/j.stem.2026.01.014
• Firooz S., Reddy BD., Steinmann P.:
  A micromorphic-based artificial diffusion method for stabilized finite element approximation of convection-diffusion problems
  In: Archive of Applied Mechanics 96 (2026)
  ISSN: 0939-1533
  DOI: 10.1007/s00419-026-03047-y
• Firooz S., Reddy BD., Zaburdaev V., Steinmann P.:
  Cellular aggregate formation: Continuum modelling and computational aspects
  In: Computer Methods in Applied Mechanics and Engineering 451 (2026), Article No.: 118687
  ISSN: 0045-7825
  DOI: 10.1016/j.cma.2025.118687
• German A., Akdas EY., Flügel-Koch C., Erterek E., Frischknecht R., Fejtová A., Winkler J., Alzheimer C., Zheng F.:
  Functional recovery of the adult murine hippocampus after cryopreservation by vitrification
  In: Proceedings of the National Academy of Sciences of the United States of America 123 (2026), Article No.: e2516848123
  ISSN: 0027-8424
  DOI: 10.1073/pnas.2516848123
• Heidenreich S., Faber J., Lorke M., Herrera-Ríos D., Schmidt S., Schambony A., Helfrich I., Boccaccini AR., Budday S., Boßerhoff AK.:
  Deciphering melanoma brain metastases: Role of cellular plasticity and metastatic origin
  In: Biomaterials Advances 188 (2026), Article No.: 214983
  ISSN: 2772-9508
  DOI: 10.1016/j.bioadv.2026.214983
• Kravikass M., Bischof L., Karandasheva K., Furlanetto F., Dolai P., Falk S., Karow-Falk M., Kobow K., Fabry B., Zaburdaev V.:
  In silico neuritogenesis model underpins mechanical interactions with extracellular matrix as determinants of persistent axonal growth in stiffer microenvironments
  (2026)
  DOI: 10.64898/2026.03.13.708543
  (online publication)
• Lampersperger H., Tranchina M., Meth B., Han D., Nayebzadeh Eidgahi N., Reiter N., Kuth S., Lorke M., Boccaccini AR., Budday S., Karow-Falk M., Falk S.:
  Mechanical impact on neural stem cell lineage decisions in human brain organoids
  In: EMBO Reports (2026)
  ISSN: 1469-221X
  DOI: 10.1038/s44319-026-00719-2
• Lisowski C., Quetting M., Klaus D., Lazarevski L., Seep L., Germer M., Li J., Müller I., Zuniga D., Fiedler W., Dechmann DK., Thorup K., Hasenauer J., Fester L., Kuerten S., Farle M., Wiedwald U., Wikelski M., Kurts C.:
  Homing pigeon navigation relies on superparamagnetic macrophages under overcast conditions
  392 (2026), p. 985-991
  ISSN: 0036-8075
  DOI: 10.1126/science.ady2486
• Lisowski C., Quetting M., Klaus D., Lazarevski L., Seep L., Germer M., Li J., Müller I., Zuniga D., Fiedler W., Dechmann DK., Thorup K., Hasenauer J., Fester L., Kuerten S., Farle M., Wiedwald U., Wikelski M., Kurts C.:
  Homing pigeon navigation relies on superparamagnetic macrophages under overcast conditions
  In: Science 392 (2026), p. 985-991
  ISSN: 0036-8075
  DOI: 10.1126/science.ady2486
• Neumann O., Gopalan Ramachandran R., Surana HV., Paulsen F., Scholz M., Gaffling S., Steinmann P., Budday S.:
  Multimodal mechanical characterization pipeline for spinal cord tissue
  In: Acta Biomaterialia 216 (2026), p. 48-271
  ISSN: 1742-7061
  DOI: 10.1016/j.actbio.2026.04.036
• Pillai EK., Mukherjee S., Gampl N., McGinn R., Mooslehner K., Becker J., Winkel AK., Thompson AJ., Franze K.:
  Long-range chemical signalling in vivo is regulated by mechanical signals
  In: Nature Materials (2026)
  ISSN: 1476-1122
  DOI: 10.1038/s41563-025-02463-9
• Reiter N., Nistler S., Hoffmann L., Bräuer L., Paulsen F., Budday S.:
  Mechanical characterization of human versus porcine brain tissue under large strains
  In: Biomechanics and Modeling in Mechanobiology 25 (2026), Article No.: 26
  ISSN: 1617-7959
  DOI: 10.1007/s10237-025-02040-8
• Ruhland L., Reiter N., Budday S., Willner K.:
  Combining quasi-static and high frequency experiments for the viscoelastic characterization of porcine brain tissue
  In: Journal of the Mechanical Behavior of Biomedical Materials 180 (2026), Article No.: 107462
  ISSN: 1751-6161
  DOI: 10.1016/j.jmbbm.2026.107462
• Sauer F., Jordan J., Meyer T., de Moraes PD., Flé G., Käs JA., Sack I.:
  Spatiotemporal mapping of microscale stiffness during collagen polymerization and crosslinking by optical multifrequency time-harmonic elastography
  In: Soft Matter (2026)
  ISSN: 1744-683X
  DOI: 10.1039/d5sm01259g
• Schattenfroh J., Meyer T., Aghamiry HS., Jaitner N., Fedders M., Görner S., Herthum H., Hetzer S., Estrella M., Flé G., Steinmann P., Guo J., Sack I.:
  In vivo wideband MR elastography for assessing age-related viscoelasticity changes of the human brain
  In: Acta Biomaterialia (2026)
  ISSN: 1742-7061
  DOI: 10.1016/j.actbio.2026.02.002
• Tueni N., Griffiths E., Weickenmeier J., Rampp S., Budday S.:
  Region-dependent mechanical parameters in simulating cerebral atrophy
  In: APL Bioengineering 10 (2026), Article No.: 016104
  ISSN: 2473-2877
  DOI: 10.1063/5.0294034
• Verma Y., Schattenfroh J., Sack I., Budday S., Steinmann P., Heltai L.:
  Simulation Platform To Evaluate Inversion Techniques For Magnetic Resonance Elastography Data
  (2026)
  DOI: 10.48550/arXiv.2604.02435
  (online publication)
• Öttl M., Mei S., Wilm F., Qiu J., Steenpaß J., Rübner M., Hartmann A., Hübner H., Fasching P., Maier A., Erber R., Breininger K.:
  Analyzing and adapting diffusion segmentation behavior for medical images
  In: Biomedical Signal Processing and Control 112 (2026), Article No.: 108619
  ISSN: 1746-8094
  DOI: 10.1016/j.bspc.2025.108619

2025

• Ammeling J., Ganz J., Wilm F., Breininger K., Aubreville M.:
  Investigation of Class Separability within Object Detection Models in Histopathology
  In: IEEE Transactions on Medical Imaging (2025)
  ISSN: 0278-0062
  DOI: 10.1109/TMI.2025.3560134
• Auer S., Schicht M., Hoffmann L., Budday S., Frischknecht R., Blümcke I., Paulsen F.:
  The Role of Perineuronal Nets in Physiology and Disease: Insights from Recent Studies
  In: Cells 14 (2025), p. 321
  ISSN: 2073-4409
  DOI: 10.3390/cells14050321
• Becker J., Winkel AK., Kreysing EM., Franze K.:
  Measurement force, speed, and postmortem time affect the ratio of CNS gray-to-white-matter elasticity
  In: Biophysical Journal (2025)
  ISSN: 0006-3495
  DOI: 10.1016/j.bpj.2025.03.009
• Blümcke I., Vorndran J.:
  Neuropathology of focal epilepsy: the promise of artificial intelligence and digital Neuropathology 3.0
  In: Pathology (2025)
  ISSN: 0031-3025
  DOI: 10.1016/j.pathol.2024.12.386
• Böhringer D., Hinrichsen J., Gataulin R., Wiedenmann S., Spörrer M., Sherifova S., Steinmann P., Holzapfel GA., Fabry B., Budday S.:
  Compression‐Tension‐Asymmetry and Stiffness Nonlinearity of Collagen‐Matrigel Composite Hydrogels
  In: Advanced Healthcare Materials (2025), Article No.: e03052
  ISSN: 2192-2640
  DOI: 10.1002/adhm.202503052
• Cecchini E., Geffers S., Coras R., Schultheis D., Holtzhausen C., Karandasheva K., Herrmann H., Paulsen F., Stadelmann C., Kobow K., Hartlieb T., Bien C., Lal D., Blümcke I., Hoffmann L.:
  Human brain tissue with MOGHE carrying somatic SLC35A2 variants reveal aberrant protein expression and protein loss in the white matter
  In: Acta Neuropathologica 149 (2025), Article No.: 23
  ISSN: 0001-6322
  DOI: 10.1007/s00401-025-02858-7
• Chakraborti S., Zaburdaev V.:
  Density-dependent transport coefficients in two-dimensional cellular aggregates
  In: Physical Review E 112 (2025), Article No.: 034406
  ISSN: 2470-0045
  DOI: 10.1103/x9qs-28vj
• Chunder R., Weier A., An Y., Zoons A., Hintze M., Kuerten S.:
  Immunization With Bovine Milk Casein Results in Enteric Nervous System Pathology in a Mouse Model of Neuroinflammation
  In: Neurogastroenterology and Motility 37 (2025), Article No.: e70142
  ISSN: 1350-1925
  DOI: 10.1111/nmo.70142
• Dahl JR., Weier A., Winter C., Hintze M., Rothhammer V., Tsaktanis T., Proebstel AK., Neziraj T., Poessnecker E., Oechtering J., Kuhle J., Kallmann BA., Luber G., Heider T., Klotz L., Chunder R., Kuerten S.:
  Modulator of VRAC Current 1 Is a Potential Target Antigen in Multiple Sclerosis
  In: Neurology, Neuroimmunology and Neuroinflammation 12 (2025)
  ISSN: 2332-7812
  DOI: 10.1212/NXI.0000000000200374
• Firooz S., Reddy BD., Steinmann P.:
  A gradient-enhanced approach for stable finite element approximations of reaction-convection-diffusion problems
  In: Journal of Theoretical, Computational and Applied Mechanics (2025), Article No.: 15788
  DOI: 10.46298/jtcam.15788
• Furlanetto F., Flegel N., Kremp M., Spear C., Fröb F., Alfonsetti M., Bohl B., Krumbiegel M., Turan S., Reis A., Lie DC., Winkler J., Falk S., Wegner M., Karow M.:
  A novel human organoid model system reveals requirement of TCF4 for oligodendroglial differentiation
  In: Life Science Alliance 8 (2025), Article No.: e202403102
  ISSN: 2575-1077
  DOI: 10.26508/lsa.202403102
• Ganz J., Ammeling J., Jabari S., Breininger K., Aubreville M.:
  Re-identification from histopathology images
  In: Medical Image Analysis 99 (2025), Article No.: 103335
  ISSN: 1361-8415
  DOI: 10.1016/j.media.2024.103335
• Ganz J., Ammeling J., Rosbach E., Lausser L., Bertram CA., Breininger K., Aubreville M.:
  Is Self-supervision Enough?: Benchmarking Foundation Models Against End-to-end Training for Mitotic Figure Classification
  German Conference on Medical Image Computing, 2025 (Regensburg, 9. März 2025 - 11. März 2025)
  In: Christoph Palm, Katharina Breininger, Thomas Deserno, Heinz Handels, Andreas Maier, Klaus H. Maier-Hein, Thomas M. Tolxdorff (ed.): Informatik aktuell 2025
  DOI: 10.1007/978-3-658-47422-5_15
• Hetzer MW., Toda T.:
  Long-lived cellular molecules in the brain
  In: Trends in Neurosciences (2025)
  ISSN: 0166-2236
  DOI: 10.1016/j.tins.2025.07.004
• Jaitner N., Safraou Y., Anders M., Schattenfroh J., Meyer T., Huang B., Jordan J., Boehm O., Caiazzo A., Schaeffter T., Mura J., Guo J., Sack I.:
  Noninvasive assessment of portal pressure by combined measurement of volumetric strain and stiffness of in vivo human liver
  In: Acta Biomaterialia 197 (2025), p. 312-325
  ISSN: 1742-7061
  DOI: 10.1016/j.actbio.2025.03.016
• Jaitner N., Shahryari M., Schattenfroh J., Meyer T., Aghamiry HS., Ludwig J., Jordan J., Janas A., Morr A., Huang B., Shams B., Picht T., Acker G., Schaeffter T., Guo J., Sack I.:
  In vivo solid stress is associated with poor patient survival in glioma
  (2025)
  DOI: 10.48550/arXiv.2510.00009
• John N., Fleming T., Kolb J., Lyraki O., Vásquez Sepúlveda SI., Parmar A., Kim K., Tarczewska M., Gupta P., Singh K., Marini F., Singh SP., Tsata V., Falk S., Franze K., Guck J., Wehner D.:
  Biphasic inflammation control by fibroblasts enables spinal cord regeneration in zebrafish
  In: Cell Reports 44 (2025), Article No.: 116469
  ISSN: 2211-1247
  DOI: 10.1016/j.celrep.2025.116469
• Kreysing EM., Gautier HO., Mukherjee S., Mooslehner K., Muresan L., Haarhoff D., Zhao X., Winkel AK., Boric T., Vásquez Sepúlveda SI., Dimitracopoulos A., Gampl N., Pillai EK., Humphrey R., Káradóttir RT., Franze K.:
  Environmental stiffness regulates neuronal maturation via Piezo1-mediated transthyretin activity
  In: Nature Communications 16 (2025), Article No.: 9842
  ISSN: 2041-1723
  DOI: 10.1038/s41467-025-64810-3
• Lorke M., Kuth S., Frischknecht R., Boccaccini AR.:
  Development of oxidized hyaluronic acid based hydrogels for neuronal tissue engineering: Effects of matrix stiffness on primary neurons
  In: Acta Biomaterialia (2025)
  ISSN: 1742-7061
  DOI: 10.1016/j.actbio.2025.09.007
• Lowinski A., Dabringhaus A., Kraemer M., Doshi H., Weier A., Hintze M., Chunder R., Kuerten S.:
  MRI-based morphometric structural changes correlate with histopathology in experimental autoimmune encephalomyelitis
  In: Journal of the Neurological Sciences 468 (2025), p. 123358
  ISSN: 0022-510X
  DOI: 10.1016/j.jns.2024.123358
• Lu HH., Froidevaux C., Biermann I., Kaňková H., Büchner M., Schubert DW., Salehi S., Boccaccini AR.:
  Printable ADA-GEL-based composite inks containing Zn-doped bioactive inorganic fillers for skeletal muscle biofabrication
  In: Biomaterials Advances 172 (2025), Article No.: 214233
  ISSN: 2772-9508
  DOI: 10.1016/j.bioadv.2025.214233
• Ma R., Lyraki O., Wehner D., Guck J.:
  Combined selective plane illumination microscopy (SPIM) and full-field optical coherence tomography (FF-OCT) for in vivo imaging
  In: Optics Continuum 4 (2025), p. 770
  ISSN: 2770-0208
  DOI: 10.1364/OPTCON.551385
• Neumann O., Surana HV., Melly SK., Steinmann P., Budday S.:
  Mechanical characteristics of spinal cord tissue by indentation
  In: Journal of the Mechanical Behavior of Biomedical Materials 163 (2025), Article No.: 106863
  ISSN: 1751-6161
  DOI: 10.1016/j.jmbbm.2024.106863
• Prieto-López L., Pereiro X., Ramírez EJ., Ruzafa N., Alonso A., Franze K., Vecino E.:
  Substrate stiffness and pressure alter retinal Müller glia response and extracellular matrix production
  In: Biomaterials and Biosystems 19 (2025), Article No.: 100114
  ISSN: 2666-5344
  DOI: 10.1016/j.bbiosy.2025.100114
• Qiu J., Aubreville M., Wilm F., Öttl M., Utz J., Schlereth M., Breininger K.:
  Abstract: Leveraging Image Captions for Selective Whole Slide Image Annotation
  German Conference on Medical Image Computing (Regensburg, 9. März 2025 - 11. März 2025)
  In: Bildverarbeitung für die Medizin 2025, Wiesbaden: 2025
  DOI: 10.1007/978-3-658-47422-5_59
• Qiu J., Jain N., Ammeling J., Aubreville M., Breininger K.:
  Effortless Vision-Language Model Specialization in Histopathology without Annotation
  In: arXiv (2025)
  ISSN: 2331-8442
  DOI: 10.48550/arXiv.2508.07835
• Reiter N., Auer S., Hoffmann L., Bräuer L., Paulsen F., Budday S.:
  Do human brain white matter and brain stem structures show direction-dependent mechanical behavior?
  In: Acta Biomaterialia (2025)
  ISSN: 1742-7061
  DOI: 10.1016/j.actbio.2025.04.004
• Ruhland L., Willner K.:
  Mechanical characterization of a brain phantom material by combining experiments in the time and frequency domain
  In: Journal of the Mechanical Behavior of Biomedical Materials 170 (2025), Article No.: 107114
  ISSN: 1751-6161
  DOI: 10.1016/j.jmbbm.2025.107114
• Schattenfroh J., Almutawakel S., Bieling J., Castelein J., Estrella M., Garteiser P., Hartung V., Hillebrandt KH., Huber AT., Körner L., Kröncke T., Malinka T., Meyer HJ., Meyer T., Pelzer U., Pfister F., Sauer IM., Speth A., Van Beers BE., Warmuth C., Wassenaar NP., Wu Y., Reiter RO., Sack I.:
  Technical Recommendation on Multi-Driver Multifrequency MR Elastography for Tomographic Mapping of Abdominal Stiffness with a Focus on the Pancreas and Pancreatic Ductal Adenocarcinoma
  In: Investigative Radiology (2025), Article No.: 10.1097/RLI.0000000000001231
  ISSN: 0020-9996
  DOI: 10.1097/RLI.0000000000001231
• Singh JB., Perelló Amorós B., Schneeberg J., Mirzapourdelavar H., Seidenbecher CI., Fejtová A., Dityatev A., Frischknecht R.:
  Activity-dependent extracellular proteolytic cascade cleaves the ECM component brevican to promote structural plasticity
  In: EMBO Reports (2025)
  ISSN: 1469-221X
  DOI: 10.1038/s44319-025-00644-w
• Öttl M., Steenpaß J., Wilm F., Qiu J., Rübner M., Lang-Schwarz C., Taverna C., Tava F., Hartmann A., Hübner H., Beckmann M., Fasching P., Maier A., Erber R., Breininger K.:
  Fully automatic HER2 tissue segmentation for interpretable HER2 scoring
  In: Journal of Pathology Informatics 17 (2025), Article No.: 100435
  ISSN: 2229-5089
  DOI: 10.1016/j.jpi.2025.100435
• Öttl M., Wilm F., Steenpaß J., Qiu J., Rübner M., Hartmann A., Beckmann M., Fasching P., Maier A., Erber R., Kainz B., Breininger K.:
  Style-Extracting Diffusion Models for Semi-supervised Histopathology Segmentation
  18th European Conference on Computer Vision, ECCV 2024 (Milan, 29. September 2024 - 4. Oktober 2024)
  In: Aleš Leonardis, Elisa Ricci, Stefan Roth, Olga Russakovsky, Torsten Sattler, Gül Varol (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2025
  DOI: 10.1007/978-3-031-73226-3_14

2024

• Almahayni K., Bachir Salvador J., Conti R., Widera A., Spiekermann M., Wehner D., Grützmacher H., Möckl L.:
  Tailored Bisacylphosphane Oxides for Precise Induction of Oxidative Stress-Mediated Cell Death in Biological Systems
  In: ACS Chemical Biology (2024)
  ISSN: 1554-8929
  DOI: 10.1021/acschembio.4c00399
• Almahayni K., Bachir Salvador J., Moonnukandathil Joseph D., Yurekli N., Möllmert S., Möckl L.:
  From Biophysics to Biomedical Physics
  In: ACS Bio & Med Chem Au 5 (2024), p. 320-333
  ISSN: 2694-2437
  DOI: 10.1021/acsbiomedchemau.4c00096
• Aubreville M., Stathonikos N., Donovan TA., Klopfleisch R., Ammeling J., Ganz J., Wilm F., Veta M., Jabari S., Eckstein M., Annuscheit J., Krumnow C., Bozaba E., Çayır S., Gu H., Chen X‘., Jahanifar M., Shephard A., Kondo S., Kasai S., Kotte S., Saipradeep VG., Lafarge MW., Koelzer VH., Wang Z., Zhang Y., Yang S., Wang X., Breininger K., Bertram CA.:
  Domain generalization across tumor types, laboratories, and species — Insights from the 2022 edition of the Mitosis Domain Generalization Challenge
  In: Medical Image Analysis 94 (2024), Article No.: 103155
  ISSN: 1361-8415
  DOI: 10.1016/j.media.2024.103155
• Bergs J., Morr AS., Silva RV., Infante-Duarte C., Sack I.:
  The Networking Brain: How Extracellular Matrix, Cellular Networks, and Vasculature Shape the In Vivo Mechanical Properties of the Brain
  In: Advanced Science 11 (2024), Article No.: 2402338
  ISSN: 2198-3844
  DOI: 10.1002/advs.202402338
• Karandasheva, K. Blümcke, I. Kobow, K.:
  Chromatin conformation changes in focal lesional epilepsy: Insights from Hi-C analysis
  In: Epilepsia 65 (2024), p. 294
  ISSN: 0013-9580
  DOI: 10.1111/epi.18151
• Boßelmann CM., Leu C., Brünger T., Hoffmann L., Baldassari S., Chipaux M., Coras R., Kobow K., Hamer H., Delev D., Rössler K., Bien CG., Kalbhenn T., Pieper T., Hartlieb T., Becker K., Ferguson L., Busch RM., Baulac S., Nuernberg P., Najm I., Blümcke I., Lal D.:
  Analysis of 1386 epileptogenic brain lesions reveals association with DYRK1A and EGFR
  In: Nature Communications 15 (2024), Article No.: 10429
  ISSN: 2041-1723
  DOI: 10.1038/s41467-024-54911-w
• Braun J., Bernarding J., Snellings J., Meyer T., Dantas de Moraes PA., Safraou Y., Wells RG., Guo J., Tzschaetzsch H., Zappe A., Pagel K., Sauer IM., Hillebrandt KH., Sack I.:
  On the relationship between viscoelasticity and water diffusion in soft biological tissues
  In: Acta Biomaterialia 182 (2024), p. 42-53
  ISSN: 1742-7061
  DOI: 10.1016/j.actbio.2024.05.007
• Böhringer D., Cóndor M., Bischof L., Czerwinski T., Gampl N., Ngo AP., Bauer A., Bosch-Voskens C., Lopez Posadas R., Franze K., Budday S., Mark C., Fabry B., Gerum R.:
  Dynamic traction force measurements of migrating immune cells in 3D biopolymer matrices
  In: Nature Physics 20 (2024), p. 1816-1823
  ISSN: 1745-2473
  DOI: 10.1038/s41567-024-02632-8
• Cecchini, E., Coras, R., Katoch, M., Kobow, K., Hartlieb, T., Bien, C. G., Bluemcke, I., Hoffmann, L.:
  Brain somatic mosaicism of sex chromosomes defines MOGHE
  In: Epilepsia 65 (2024), p. 50-51
  ISSN: 0013-9580
  DOI: 10.1111/epi.18151
• Chakraborti S., Zaburdaev V.:
  Transport in cellular aggregates described by fluctuating hydrodynamics
  In: Physical Review Research 6 (2024), Article No.: 043064
  ISSN: 2643-1564
  DOI: 10.1103/PhysRevResearch.6.043064
• Fabian M., Rajput JR., Schüre JR., Weinmüller S., Mennecke A., Möhle TA., Rampp S., Schmidt M., Dörfler A., Zaiß M.:
  Comprehensive 7 T CEST: A clinical MRI protocol covering multiple exchange rate regimes
  In: NMR in Biomedicine (2024)
  ISSN: 0952-3480
  DOI: 10.1002/nbm.5096
• Firooz S., Reddy BD., Zaburdaev V., Steinmann P.:
  Mean zero artificial diffusion for stable finite element approximation of convection in cellular aggregate formation
  In: Computer Methods in Applied Mechanics and Engineering 419 (2024), p. 116649
  ISSN: 0045-7825
  DOI: 10.1016/j.cma.2023.116649
• Franze K.:
  Tensed axons are on fire
  In: Proceedings of the National Academy of Sciences of the United States of America 121 (2024), p. e2321811121
  ISSN: 0027-8424
  DOI: 10.1073/pnas.2321811121
• Ganz J., Marzahl C., Ammeling J., Rosbach E., Richter B., Puget C., Denk D., Demeter EA., Tăbăran FA., Wasinger G., Lipnik K., Tecilla M., Valentine MJ., Dark MJ., Abele N., Bolfa P., Erber R., Klopfleisch R., Merz S., Donovan TA., Jabari S., Bertram CA., Breininger K., Aubreville M.:
  Information mismatch in PHH3-assisted mitosis annotation leads to interpretation shifts in H&E slide analysis
  In: Scientific Reports 14 (2024), Article No.: 26273
  ISSN: 2045-2322
  DOI: 10.1038/s41598-024-77244-6
• Greiner A., Reiter N., Hinrichsen J., Kainz MP., Sommer G., Holzapfel GA., Steinmann P., Comellas E., Budday S.:
  Model-driven exploration of poro-viscoelasticity in human brain tissue: be careful with the parameters!
  In: Interface Focus 14 (2024)
  ISSN: 2042-8901
  DOI: 10.1098/rsfs.2024.0026
• Gutmann M., Salvador JB., Müller P., Kim K., Schicht M., Aif S., Paulsen F., Meinel L., Guck J., Möllmert S.:
  Beyond comparison: Brillouin microscopy and AFM-based indentation reveal divergent insights into the mechanical profile of the murine retina
  In: JPhys Photonics 6 (2024), Article No.: 035020
  ISSN: 2515-7647
  DOI: 10.1088/2515-7647/ad5ae3
• Hinrichsen J., Feiler L., Reiter N., Bräuer L., Schicht M., Paulsen F., Budday S.:
  Identifying composition-mechanics relations in human brain tissue based on neural-network-enhanced inverse parameter identification
  In: Mathematics and Mechanics of Solids (2024)
  ISSN: 1081-2865
  DOI: 10.1177/10812865231206544
• Hinrichsen J., Ferlay C., Reiter N., Budday S.:
  Using dropout based active learning and surrogate models in the inverse viscoelastic parameter identification of human brain tissue
  In: Frontiers in Physiology 15 (2024), Article No.: 1321298
  ISSN: 1664-042X
  DOI: 10.3389/fphys.2024.1321298
• Jordan J., Jaitner N., Meyer T., Brame L., Ghrayeb M., Köppke J., Böhm O., Klemmer Chandía S., Zaburdaev V., Chai L., Tzschaetzsch H., Mura J., Braun J., Hagemann AIH., Sack I.:
  Rapid Stiffness Mapping in Soft Biologic Tissues With Micrometer Resolution Using Optical Multifrequency Time‐Harmonic Elastography
  In: Advanced Science (2024)
  ISSN: 2198-3844
  DOI: 10.1002/advs.202410473
• Jun S., Jun S., Herbst A., Herbst A., Scheffter K., John N., Kolb J., Wehner D., Fattahi H.:
  Nonlinear dynamics of femtosecond laser interaction with the central nervous system in zebrafish
  In: Communications Physics 7 (2024), Article No.: 161
  ISSN: 2399-3650
  DOI: 10.1038/s42005-024-01653-2
• Kasper BS., Archer J., Bernhardt BC., Caciagli L., Cendes F., Chinvarun Y., Concha L., Federico P., Gaillard W., Kobayashi E., Ogbole G., Vaudano A., Wang I., Wang S., Winston G., Rampp S.:
  ILAE neuroimaging task force highlight: Subcortical laminar heterotopia
  In: Epileptic Disorders (2024)
  ISSN: 1294-9361
  DOI: 10.1002/epd2.20206
• Klemmer Chandía S., Schattenfroh J., Brinker ST., Tzschaetzsch H., Sack I., Meyer T.:
  Multimodal assessment of brain stiffness variation in healthy subjects using magnetic resonance elastography and ultrasound time-harmonic elastography
  In: Scientific Reports 14 (2024), Article No.: 28580
  ISSN: 2045-2322
  DOI: 10.1038/s41598-024-79991-y
• Kreidenhuber R., Poppert KN., Mauritz M., Hamer H., Delev D., Schnell O., Rampp S.:
  MEG in MRI-Negative Patients with Focal Epilepsy
  In: Journal of Clinical Medicine 13 (2024), Article No.: 5746
  ISSN: 2077-0383
  DOI: 10.3390/jcm13195746
• Kuth S., Boccaccini AR.:
  Enzymatic Insitu Crosslinking Can Improve Hydrogel Stability While Maintaining Matrix Stiffness
  In: ChemistrySelect 9 (2024), Article No.: e202401700
  ISSN: 2365-6549
  DOI: 10.1002/slct.202401700
• Lehner A., Hoffmann L., Rampp S., Coras R., Paulsen F., Frischknecht R., Hamer H., Walther K., Brandner S., Hofer W., Pieper T., Reisch LM., Bien CG., Blümcke I.:
  Age-dependent increase of perineuronal nets in the human hippocampus and precocious aging in epilepsy
  In: Epilepsia Open 9 (2024), p. 1372-1381
  ISSN: 2470-9239
  DOI: 10.1002/epi4.12963
• Melnyk O., Quellmalz M., Steidl G., Jaitner N., Jordan JEL., Sack I.:
  Time-harmonic optical flow with applications in elastography
  In: Inverse Problems 40 (2024), p. 125026
  ISSN: 0266-5611
  DOI: 10.1088/1361-6420/ad9776
• Meyer T., Castelein J., Schattenfroh J., Morr AS., Da Silva RV., Tzschaetzsch H., Reiter R., Guo J., Sack I.:
  Magnetic resonance elastography in a nutshell: Tomographic imaging of soft tissue viscoelasticity for detecting and staging disease with a focus on inflammation
  In: Progress in Nuclear Magnetic Resonance Spectroscopy 144-145 (2024), p. 1-14
  ISSN: 0079-6565
  DOI: 10.1016/j.pnmrs.2024.05.002
• Möckel C., Beck T., Kaliman S., Abuhattum S., Kim K., Kolb J., Wehner D., Zaburdaev V., Guck J.:
  Estimation of the mass density of biological matter from refractive index measurements
  In: Biophysical Reports (2024), p. 100156
  ISSN: 2667-0747
  DOI: 10.1016/j.bpr.2024.100156
• Qiu J., Aubreville M., Wilm F., Öttl M., Utz J., Schlereth M., Breininger K.:
  Leveraging Image Captions for Selective Whole Slide Image Annotation
  27th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2024 (Marrakesh, 6. Oktober 2024 - 10. Oktober 2024)
  In: Marius George Linguraru, Qi Dou, Aasa Feragen, Stamatia Giannarou, Ben Glocker, Karim Lekadir, Julia A. Schnabel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024
  DOI: 10.1007/978-3-031-72390-2_20
• Silva RV., Morr AS., Herthum H., Koch SP., Mueller S., Batzdorf CS., Bertalan G., Meyer T., Tzschaetzsch H., Kuehl AA., Boehm-Sturm P., Braun J., Scheel M., Paul F., Infante-Duarte C., Sack I.:
  Cortical matrix remodeling as a hallmark of relapsing–remitting neuroinflammation in MR elastography and quantitative MRI
  In: Acta Neuropathologica 147 (2024), Article No.: 8
  ISSN: 0001-6322
  DOI: 10.1007/s00401-023-02658-x
• Vorndran J., Blümcke I.:
  A deep‐learning‐based histopathology classifier for focal cortical dysplasia (FCD) unravels a complex scenario of comorbid FCD subtypes
  In: Epilepsia (2024)
  ISSN: 0013-9580
  DOI: 10.1111/epi.18161
• Wilm F., Reimann MK., Taubmann O., Mühlberg A., Breininger K.:
  Appearance-based Debiasing of Deep Learning Models in Medical Imaging
  German Conference on Medical Image Computing, BVM 2024 (Erlangen, 10. März 2024 - 12. März 2024)
  In: Andreas Maier, Thomas M. Deserno, Heinz Handels, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2024. BVM 2024, Wiesbaden: 2024
  DOI: 10.1007/978-3-658-44037-4_9

2023

• Aubreville M., Wilm F., Stathonikos N., Breininger K., Donovan TA., Jabari S., Veta M., Ganz J., Ammeling J., van Diest PJ., Klopfleisch R., Bertram CA.:
  A comprehensive multi-domain dataset for mitotic figure detection
  In: Scientific Data 10 (2023), Article No.: 484
  ISSN: 2052-4463
  DOI: 10.1038/s41597-023-02327-4
• Bertalan G., Becker J., Tzschätzsch H., Morr A., Herthum H., Shahryari M., Greenhalgh RD., Guo J., Schröder L., Alzheimer C., Budday S., Franze K., Braun J., Sack I.:
  Mechanical behavior of the hippocampus and corpus callosum: An attempt to reconcile ex vivo with in vivo and micro with macro properties
  In: Journal of the Mechanical Behavior of Biomedical Materials 138 (2023), Article No.: 105613
  ISSN: 1751-6161
  DOI: 10.1016/j.jmbbm.2022.105613
• Firooz S., Javili A., Steinmann P.:
  A versatile implicit computational framework for continuum-kinematics-inspired peridynamics
  In: Computational Mechanics (2023)
  ISSN: 0178-7675
  DOI: 10.1007/s00466-023-02415-7
• Flaschel M., Yu H., Reiter N., Hinrichsen J., Budday S., Steinmann P., Kumar S., De Lorenzis L.:
  Automated discovery of interpretable hyperelastic material models for human brain tissue with EUCLID
  In: Journal of the Mechanics and Physics of Solids 180 (2023), Article No.: 105404
  ISSN: 0022-5096
  DOI: 10.1016/j.jmps.2023.105404
• Hinrichsen J., Reiter N., Bräuer L., Paulsen F., Käßmair S., Budday S.:
  Inverse identification of region-specific hyperelastic material parameters for human brain tissue
  In: Biomechanics and Modeling in Mechanobiology 22 (2023), p. 1729-1749
  ISSN: 1617-7959
  DOI: 10.1007/s10237-023-01739-w
• Hoffmann L., Coras R., Kobow K., López-Rivera JA., Lal D., Leu C., Najm I., Nürnberg P., Herms J., Harter PN., Bien CG., Kalbhenn T., Müller M., Pieper T., Hartlieb T., Kudernatsch M., Hamer H., Brandner S., Rössler K., Blümcke I., Jabari S.:
  Ganglioglioma with adverse clinical outcome and atypical histopathological features were defined by alterations in PTPN11/KRAS/NF1 and other RAS-/MAP-Kinase pathway genes
  In: Acta Neuropathologica (2023)
  ISSN: 0001-6322
  DOI: 10.1007/s00401-023-02561-5
• Honke J., Hoffmann L., Coras R., Kobow K., Leu C., Pieper T., Hartlieb T., Bien CG., Woermann F., Cloppenborg T., Kalbhenn T., Gaballa A., Hamer H., Brandner S., Rössler K., Dörfler A., Rampp S., Lemke JR., Baldassari S., Baulac S., Lal D., Nürnberg P., Blümcke I.:
  Deep histopathology genotype–phenotype analysis of focal cortical dysplasia type II differentiates between the GATOR1-altered autophagocytic subtype IIa and MTOR-altered migration deficient subtype IIb
  In: Acta Neuropathologica Communications 11 (2023), Article No.: 179
  ISSN: 2051-5960
  DOI: 10.1186/s40478-023-01675-x
• Kolb J., Tsata V., John N., Kim K., Möckel C., Rosso G., Kurbel V., Parmar A., Sharma G., Karandasheva K., Abuhattum S., Lyraki O., Beck T., Mueller P., Schlüßler R., Frischknecht R., Wehner A., Krombholz N., Steigenberger B., Beis D., Takeoka A., Blümcke I., Möllmert S., Singh K., Guck J., Kobow K., Wehner D.:
  Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment
  In: Nature Communications 14 (2023), Article No.: 6814
  ISSN: 2041-1723
  DOI: 10.1038/s41467-023-42339-7
• Kreitz S., Mennecke A., Konerth L., Rösch J., Nagel AM., Laun FB., Uder M., Dörfler A., Heß A.:
  3T vs. 7T fMRI: capturing early human memory consolidation after motor task utilizing the observed higher functional specificity of 7T
  In: Frontiers in Neuroscience 17 (2023)
  ISSN: 1662-4548
  DOI: 10.3389/fnins.2023.1215400
• Kuth S., Lorke M., Frischknecht R., Boccaccini AR.:
  Tinten für die Biofabrikation–Druckbarkeit vs. Biokompatibilität?
  In: BioSpektrum 29 (2023), p. 736-739
  ISSN: 0947-0867
  DOI: 10.1007/s12268-023-2046-0
• Pillai EK., Franze K.:
  Mechanics in the nervous system: From development to disease
  In: Neuron (2023)
  ISSN: 0896-6273
  DOI: 10.1016/j.neuron.2023.10.005
• Pranavi D., Steinmann P., Rajagopal A.:
  A unifying finite strain modeling framework for anisotropic mixed-mode fracture in soft materials
  In: Computational Mechanics (2023)
  ISSN: 0178-7675
  DOI: 10.1007/s00466-023-02359-y
• Reiter N., Paulsen F., Budday S.:
  Mechanisms of mechanical load transfer through brain tissue
  In: Scientific Reports 13 (2023), Article No.: 8703
  ISSN: 2045-2322
  DOI: 10.1038/s41598-023-35768-3
• Reiter N., Schäfer AM., Auer S., Paulsen F., Budday S.:
  Modeling the finite viscoelasticity of human brain tissue based on microstructural information
  In: Proceedings in Applied Mathematics and Mechanics (2023)
  ISSN: 1617-7061
  DOI: 10.1002/pamm.202300234
• Stüfchen I., Beyer F., Stäbler S., Fischer S., Kappelmann M., Beckervordersandforth R., Boßerhoff AK.:
  Sox9 regulates melanocytic fate decision of adult hair follicle stem cells
  In: iScience 26 (2023), Article No.: 106919
  ISSN: 2589-0042
  DOI: 10.1016/j.isci.2023.106919
• Sáez P., Borau C., Antonovaite N., Franze K.:
  Brain tissue mechanics is governed by microscale relations of the tissue constituents
  In: Biomaterials 301 (2023), Article No.: 122273
  ISSN: 0142-9612
  DOI: 10.1016/j.biomaterials.2023.122273
• Wang DD., Katoch M., Jabari S., Blümcke I., Blumenthal DB., Lu DH., Coras R., Wang YJ., Shi J., Zhou WJ., Kobow K., Piao YS.:
  The specific DNA methylation landscape in focal cortical dysplasia ILAE type 3D
  In: Acta Neuropathologica Communications 11 (2023), Article No.: 129
  ISSN: 2051-5960
  DOI: 10.1186/s40478-023-01618-6
• Zarzor MS., Blümcke I., Budday S.:
  Exploring the role of the outer subventricular zone during cortical folding through a physics-based model
  In: eLife 12 (2023)
  ISSN: 2050-084X
  DOI: 10.7554/eLife.82925
• Zarzor MS., Steinmann P., Budday S.:
  Multifield computational model for human brain development: Explicit numerical stabilization
  In: Proceedings in Applied Mathematics and Mechanics (2023)
  ISSN: 1617-7061
  DOI: 10.1002/pamm.202300288